Make an intersection degree plot for a set of unique identifiers

make_intersect_plot(
  IDlist,
  shortNames,
  mediumUsed,
  fracMethod,
  Yrange = c(0, 100),
  plotType = "Protein"
)

Arguments

IDlist

A list of vectors. Each list item should be a vector of unique identifiers corresponding to protein or proteoform IDs, e.g. UniProt accession numbers or proteoform record numbers from the Consortium for Top-Down Proteomics proteoform atlas. This function is deprecated in favor of `make_intersection_degree_plot()`.

shortNames

Vector of short names

mediumUsed

Vector of media used

fracMethod

Vector of frac methods

Yrange

Percentage range to use for the Y-axis of the plot. Defaults to `c(0,100)`.

plotType

Type of plot to create, typically "Protein" or "Proteoform".This only affects the Y-axis title and can be any string.

Value